abagen.io.read_genes¶
- abagen.io.read_genes(fname, copy=False)[source]¶
Loads Genes.csv file found at fname
Genes files contain metadata on all genes used in the RNAseq AHBA data. These files should be the same for every donor.
- Parameters
- Returns
genes – Dataframe containing information for G unique genes. The row index is the unique gene symbol which can be used to match metadata to information obtained with
read_tpm()
andread_counts()
. Columns include ‘gene_id’, ‘entrez_id’, ‘chromosome’, ‘strand’, ‘number_of_transcripts’, ‘median_transcriptome_length’, ‘median_genome_length’, ‘median_number_of_exons’, ‘median_gene_start’, and ‘median_gene_end’- Return type
(G, 11) pandas.DataFrame