Citing abagen

Note

We strongly encourage you to use the automatically-generated methods reports built into abagen, which will provide a list of citations based on your selected processing options!

We’re thrilled you’ve found abagen useful in your work! Please cite the following manuscripts when referencing your use of the toolbox:

  1. Markello, RD, Arnatkevic̆iūtė, A, Poline, J-B, Fulcher, BD, Fornito, A, & Misic, B. (2021). Standardizing workflows in imaging transcriptomics with the abagen toolbox. Biorxiv. doi:10.1101/2021.07.08.451635

  2. Arnatkevic̆iūtė, A, Fulcher, BD, & Fornito, A. (2019). A practical guide to linking brain-wide gene expression and neuroimaging data. NeuroImage, 189, 353-367. doi:10.1016/j.neuroimage.2019.01.011

  3. Hawrylycz, MJ, Lein, ES, Guillozet-Bongaarts, AL, Shen, EH, Ng, L, Miller, JA, …, & Jones, AR. (2012). An anatomically comprehensive atlas of the adult human brain transcriptome. Nature, 489(7416), 391–399. doi:10.1038/nature11405

Additionally, to cite the specific version of the toolbox used in your analyses you can use the following Zenodo reference:

abagen Available from: 10.5281/zenodo.3451463.

Note that this will always point to the most recent abagen release; for older releases please refer to the Zenodo listing.

For more information about why citing software is important please refer to this article from the Software Sustainability Institute.