User guide

abagen aims to provide a reproducible pipeline for processing and preparing microarray expression data provided by the Allen Human Brain Atlas (AHBA) for research analyses.

This user guide steps through the basics of fetching microarray expression data from the AHBA, defining an atlas or parcellation for wrangling that data, and actually parcellating the data into a more usable, analyis-ready format. If you still have questions after going through this guide you can refer to the Reference API or ask a question on GitHub.