Index

A

abagen.allen module abagen.correct module abagen.datasets module abagen.images module abagen.io module abagen.matching module

abagen.mouse module abagen.reporting module annot_to_gifti() (in module abagen) atlas (abagen.AtlasTree property) atlas_info (abagen.AtlasTree property) AtlasTree (class in abagen) available_gene_info() (in module abagen.mouse) available_structure_info() (in module abagen.mouse) available_unionization_info() (in module abagen.mouse)

C

centroids (abagen.AtlasTree property) check_atlas() (in module abagen)

closest_centroid() (in module abagen.matching) coords (abagen.AtlasTree property)

F

fetch_allenref_genes() (in module abagen.mouse) fetch_allenref_structures() (in module abagen.mouse) fetch_desikan_killiany() (in module abagen) fetch_donor_info() (in module abagen) fetch_freesurfer() (in module abagen) fetch_fsaverage5() (in module abagen.datasets)

fetch_fsnative() (in module abagen.datasets) fetch_gene_group() (in module abagen) fetch_microarray() (in module abagen) fetch_raw_mri() (in module abagen) fetch_rnaseq() (in module abagen) fetch_rubinov2015_structures() (in module abagen.mouse) fill_label() (abagen.AtlasTree method)

G

gen_report() (abagen.Report method) get_centroids() (in module abagen.matching) get_expression_data() (in module abagen) get_gene_info() (in module abagen.mouse) get_interpolated_map() (in module abagen)

get_samples_in_mask() (in module abagen) get_structure_coordinates() (in module abagen.mouse) get_structure_info() (in module abagen.mouse) get_unionization_from_gene() (in module abagen.mouse) graph (abagen.AtlasTree property)

K

keep_stable_genes() (in module abagen)

L

label_samples() (abagen.AtlasTree method)

labels (abagen.AtlasTree property) leftify_atlas() (in module abagen)

M

match_closest_centroids() (abagen.AtlasTree method) module abagen.allen abagen.correct abagen.datasets abagen.images abagen.io abagen.matching abagen.mouse abagen.reporting

N

normalize_expression() (in module abagen)

R

read_annotation() (in module abagen.io) read_counts() (in module abagen.io) read_genes() (in module abagen.io) read_microarray() (in module abagen.io) read_ontology() (in module abagen.io)

read_pacall() (in module abagen.io) read_probes() (in module abagen.io) read_tpm() (in module abagen.io) relabel_gifti() (in module abagen) remove_distance() (in module abagen) Report (class in abagen)

T

tree (abagen.AtlasTree property)

triangles (abagen.AtlasTree property)

V

volumetric (abagen.AtlasTree property)